Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 6897)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 17500)	% of Background Sequences with Motif
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-3	-8.729e+00	0.0398	20.0	0.29%	21.0	0.12%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-1	-4.555e+00	1.0000	3308.0	47.16%	8309.6	45.78%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-1	-4.416e+00	1.0000	3150.0	44.91%	7907.8	43.57%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-1	-4.314e+00	1.0000	3241.0	46.21%	8146.4	44.88%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-1	-3.962e+00	1.0000	1601.0	22.83%	3955.9	21.80%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e-1	-3.790e+00	1.0000	220.0	3.14%	496.1	2.73%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-2.782e+00	1.0000	2095.0	29.87%	5268.1	29.03%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-1	-2.506e+00	1.0000	456.0	6.50%	1107.0	6.10%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-2.080e+00	1.0000	34.0	0.48%	71.9	0.40%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-2.046e+00	1.0000	1127.0	16.07%	2826.8	15.57%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.675e+00	1.0000	351.0	5.00%	866.3	4.77%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.599e+00	1.0000	2098.0	29.91%	5345.2	29.45%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.425e+00	1.0000	2834.0	40.40%	7257.4	39.99%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.413e+00	1.0000	45.0	0.64%	104.1	0.57%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.342e+00	1.0000	32.0	0.46%	73.1	0.40%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.232e+00	1.0000	13.0	0.19%	28.5	0.16%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.163e+00	1.0000	1243.0	17.72%	3176.0	17.50%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.163e+00	1.0000	146.0	2.08%	363.0	2.00%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.125e+00	1.0000	376.0	5.36%	950.4	5.24%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.119e+00	1.0000	47.0	0.67%	113.9	0.63%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-1.070e+00	1.0000	145.0	2.07%	362.7	2.00%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.054e+00	1.0000	23.0	0.33%	54.8	0.30%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.008e+00	1.0000	1771.0	25.25%	4549.3	25.07%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-9.721e-01	1.0000	816.0	11.63%	2089.1	11.51%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-9.473e-01	1.0000	2416.0	34.45%	6221.9	34.28%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-8.902e-01	1.0000	1546.0	22.04%	3979.7	21.93%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-8.649e-01	1.0000	111.0	1.58%	281.2	1.55%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-8.159e-01	1.0000	119.0	1.70%	304.0	1.67%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-8.022e-01	1.0000	380.0	5.42%	976.2	5.38%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-7.996e-01	1.0000	2011.0	28.67%	5190.6	28.60%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-7.352e-01	1.0000	2433.0	34.69%	6289.6	34.65%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-7.289e-01	1.0000	1704.0	24.29%	4404.4	24.27%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.706e-01	1.0000	165.0	2.35%	428.0	2.36%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.706e-01	1.0000	165.0	2.35%	428.0	2.36%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-6.458e-01	1.0000	229.0	3.26%	594.6	3.28%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-6.061e-01	1.0000	589.0	8.40%	1530.8	8.43%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-6.057e-01	1.0000	822.0	11.72%	2134.2	11.76%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-6.024e-01	1.0000	977.0	13.93%	2536.8	13.98%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-5.847e-01	1.0000	517.0	7.37%	1345.8	7.41%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.731e-01	1.0000	128.0	1.82%	335.6	1.85%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-5.052e-01	1.0000	107.0	1.53%	283.9	1.56%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-5.002e-01	1.0000	326.0	4.65%	855.0	4.71%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-4.930e-01	1.0000	71.0	1.01%	189.9	1.05%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-4.112e-01	1.0000	575.0	8.20%	1512.3	8.33%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-3.975e-01	1.0000	24.0	0.34%	67.3	0.37%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-3.105e-01	1.0000	187.0	2.67%	505.9	2.79%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-3.056e-01	1.0000	1172.0	16.71%	3083.1	16.99%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.798e-01	1.0000	481.0	6.86%	1282.3	7.07%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-2.776e-01	1.0000	226.0	3.22%	611.8	3.37%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-2.667e-01	1.0000	160.0	2.28%	438.0	2.41%
NRF1/Promoter/Homer	STGCGCATGCGC	1e0	-2.623e-01	1.0000	110.0	1.57%	304.6	1.68%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-2.346e-01	1.0000	301.0	4.29%	814.4	4.49%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.276e-01	1.0000	238.0	3.39%	648.9	3.57%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.187e-01	1.0000	60.0	0.86%	172.8	0.95%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.171e-01	1.0000	296.0	4.22%	803.7	4.43%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-2.132e-01	1.0000	306.0	4.36%	830.6	4.58%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-2.120e-01	1.0000	443.0	6.32%	1192.2	6.57%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.951e-01	1.0000	296.0	4.22%	806.4	4.44%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.910e-01	1.0000	383.0	5.46%	1037.7	5.72%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.835e-01	1.0000	141.0	2.01%	394.2	2.17%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.809e-01	1.0000	161.0	2.30%	448.7	2.47%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.747e-01	1.0000	243.0	3.46%	668.1	3.68%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.661e-01	1.0000	157.0	2.24%	439.5	2.42%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.569e-01	1.0000	53.0	0.76%	158.0	0.87%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.529e-01	1.0000	874.0	12.46%	2338.6	12.88%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.380e-01	1.0000	394.0	5.62%	1077.0	5.93%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.366e-01	1.0000	825.0	11.76%	2214.7	12.20%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.279e-01	1.0000	197.0	2.81%	552.8	3.05%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.241e-01	1.0000	884.0	12.60%	2374.0	13.08%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-1.215e-01	1.0000	147.0	2.10%	418.3	2.30%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.214e-01	1.0000	596.0	8.50%	1615.3	8.90%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.163e-01	1.0000	298.0	4.25%	825.9	4.55%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.154e-01	1.0000	3004.0	42.83%	7904.3	43.55%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-9.816e-02	1.0000	354.0	5.05%	979.9	5.40%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-9.752e-02	1.0000	951.0	13.56%	2559.8	14.10%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e0	-9.507e-02	1.0000	130.0	1.85%	376.8	2.08%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-9.141e-02	1.0000	151.0	2.15%	434.9	2.40%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-9.102e-02	1.0000	529.0	7.54%	1447.6	7.98%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-8.580e-02	1.0000	144.0	2.05%	416.3	2.29%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-8.199e-02	1.0000	1070.0	15.26%	2879.2	15.86%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-8.150e-02	1.0000	1482.0	21.13%	3960.9	21.82%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-7.530e-02	1.0000	704.0	10.04%	1917.6	10.57%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-7.439e-02	1.0000	130.0	1.85%	380.1	2.09%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-7.330e-02	1.0000	292.0	4.16%	820.9	4.52%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-6.749e-02	1.0000	221.0	3.15%	630.3	3.47%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-6.695e-02	1.0000	1035.0	14.76%	2795.8	15.40%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-6.568e-02	1.0000	631.0	9.00%	1728.1	9.52%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-6.565e-02	1.0000	564.0	8.04%	1550.9	8.55%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-6.364e-02	1.0000	140.0	2.00%	410.6	2.26%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-6.299e-02	1.0000	547.0	7.80%	1506.8	8.30%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-6.297e-02	1.0000	1330.0	18.96%	3573.8	19.69%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-6.284e-02	1.0000	1476.0	21.04%	3956.4	21.80%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-6.186e-02	1.0000	1562.0	22.27%	4182.4	23.04%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-6.031e-02	1.0000	947.0	13.50%	2567.4	14.15%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-5.776e-02	1.0000	806.0	11.49%	2196.4	12.10%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-5.705e-02	1.0000	182.0	2.59%	527.0	2.90%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-5.627e-02	1.0000	648.0	9.24%	1778.7	9.80%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-5.325e-02	1.0000	279.0	3.98%	792.5	4.37%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-5.198e-02	1.0000	1023.0	14.59%	2773.6	15.28%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-5.012e-02	1.0000	307.0	4.38%	869.3	4.79%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-4.599e-02	1.0000	34.0	0.48%	115.2	0.63%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-4.589e-02	1.0000	300.0	4.28%	852.6	4.70%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-4.490e-02	1.0000	368.0	5.25%	1036.8	5.71%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-3.963e-02	1.0000	1056.0	15.06%	2870.0	15.81%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-3.751e-02	1.0000	187.0	2.67%	548.3	3.02%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-3.411e-02	1.0000	1253.0	17.86%	3395.1	18.71%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-3.109e-02	1.0000	149.0	2.12%	446.3	2.46%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-3.074e-02	1.0000	681.0	9.71%	1884.3	10.38%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-2.791e-02	1.0000	447.0	6.37%	1260.4	6.94%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.571e-02	1.0000	1320.0	18.82%	3582.2	19.74%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-2.433e-02	1.0000	680.0	9.69%	1888.7	10.41%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.247e-02	1.0000	162.0	2.31%	487.5	2.69%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.216e-02	1.0000	962.0	13.72%	2641.7	14.55%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.196e-02	1.0000	354.0	5.05%	1014.9	5.59%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-2.070e-02	1.0000	286.0	4.08%	830.5	4.58%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.818e-02	1.0000	558.0	7.96%	1569.7	8.65%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.358e-02	1.0000	183.0	2.61%	553.4	3.05%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.341e-02	1.0000	28.0	0.40%	106.3	0.59%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-1.183e-02	1.0000	777.0	11.08%	2167.5	11.94%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.155e-02	1.0000	997.0	14.21%	2754.6	15.18%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.130e-02	1.0000	90.0	1.28%	292.3	1.61%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.056e-02	1.0000	76.0	1.08%	252.6	1.39%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.009e-02	1.0000	784.0	11.18%	2190.4	12.07%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-9.177e-03	1.0000	739.0	10.54%	2072.1	11.42%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-7.027e-03	1.0000	1839.0	26.22%	4994.4	27.52%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-6.788e-03	1.0000	785.0	11.19%	2203.5	12.14%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-6.754e-03	1.0000	1371.0	19.55%	3762.3	20.73%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-6.741e-03	1.0000	504.0	7.19%	1446.3	7.97%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-6.503e-03	1.0000	108.0	1.54%	350.2	1.93%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-6.248e-03	1.0000	2152.0	30.68%	5819.1	32.06%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-5.898e-03	1.0000	344.0	4.90%	1012.5	5.58%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-5.493e-03	1.0000	1529.0	21.80%	4186.3	23.07%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-5.291e-03	1.0000	836.0	11.92%	2346.6	12.93%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-5.121e-03	1.0000	346.0	4.93%	1020.3	5.62%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-5.021e-03	1.0000	302.0	4.31%	899.4	4.96%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-4.706e-03	1.0000	1306.0	18.62%	3601.3	19.84%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-4.139e-03	1.0000	412.0	5.87%	1205.5	6.64%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-4.123e-03	1.0000	1190.0	16.97%	3297.4	18.17%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-4.037e-03	1.0000	704.0	10.04%	1998.2	11.01%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-3.118e-03	1.0000	377.0	5.37%	1114.2	6.14%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-2.983e-03	1.0000	499.0	7.11%	1449.4	7.99%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-2.923e-03	1.0000	177.0	2.52%	557.6	3.07%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.848e-03	1.0000	159.0	2.27%	506.9	2.79%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.776e-03	1.0000	1110.0	15.83%	3095.3	17.05%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-2.504e-03	1.0000	663.0	9.45%	1898.2	10.46%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-2.401e-03	1.0000	180.0	2.57%	568.7	3.13%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-2.370e-03	1.0000	482.0	6.87%	1407.0	7.75%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-2.304e-03	1.0000	484.0	6.90%	1413.1	7.79%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-1.842e-03	1.0000	1223.0	17.44%	3407.0	18.77%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.759e-03	1.0000	211.0	3.01%	660.3	3.64%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.693e-03	1.0000	3774.0	53.81%	10081.0	55.54%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-1.637e-03	1.0000	1341.0	19.12%	3724.9	20.52%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.617e-03	1.0000	934.0	13.32%	2638.5	14.54%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.578e-03	1.0000	1250.0	17.82%	3483.2	19.19%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.404e-03	1.0000	688.0	9.81%	1978.4	10.90%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.369e-03	1.0000	294.0	4.19%	897.3	4.94%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.347e-03	1.0000	2754.0	39.26%	7444.7	41.02%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.315e-03	1.0000	665.0	9.48%	1917.8	10.57%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.303e-03	1.0000	486.0	6.93%	1429.7	7.88%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.199e-03	1.0000	1069.0	15.24%	3007.8	16.57%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.145e-03	1.0000	1613.0	23.00%	4455.5	24.55%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.125e-03	1.0000	1388.0	19.79%	3860.0	21.27%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.058e-03	1.0000	670.0	9.55%	1935.3	10.66%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-9.390e-04	1.0000	1623.0	23.14%	4487.9	24.73%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-9.350e-04	1.0000	4793.0	68.33%	12711.2	70.03%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-8.690e-04	1.0000	1495.0	21.31%	4150.4	22.87%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-8.360e-04	1.0000	780.0	11.12%	2238.4	12.33%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-7.550e-04	1.0000	949.0	13.53%	2696.9	14.86%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-5.770e-04	1.0000	1601.0	22.83%	4442.2	24.48%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-5.070e-04	1.0000	1449.0	20.66%	4042.5	22.27%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-4.860e-04	1.0000	1548.0	22.07%	4306.7	23.73%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-4.700e-04	1.0000	221.0	3.15%	705.4	3.89%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-3.910e-04	1.0000	464.0	6.62%	1389.8	7.66%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-3.670e-04	1.0000	1869.0	26.65%	5163.3	28.45%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-3.030e-04	1.0000	916.0	13.06%	2627.2	14.48%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-2.950e-04	1.0000	961.0	13.70%	2749.8	15.15%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-2.080e-04	1.0000	1651.0	23.54%	4601.8	25.35%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-2.050e-04	1.0000	1783.0	25.42%	4951.4	27.28%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.990e-04	1.0000	1740.0	24.81%	4838.7	26.66%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.990e-04	1.0000	1892.0	26.97%	5240.4	28.87%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.940e-04	1.0000	1636.0	23.32%	4563.6	25.14%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.920e-04	1.0000	757.0	10.79%	2205.2	12.15%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.830e-04	1.0000	2006.0	28.60%	5543.7	30.54%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.820e-04	1.0000	546.0	7.78%	1628.1	8.97%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.800e-04	1.0000	952.0	13.57%	2735.8	15.07%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.750e-04	1.0000	431.0	6.14%	1310.1	7.22%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.470e-04	1.0000	1065.0	15.18%	3044.8	16.78%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.460e-04	1.0000	1296.0	18.48%	3664.8	20.19%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.300e-04	1.0000	1054.0	15.03%	3017.3	16.62%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.290e-04	1.0000	904.0	12.89%	2612.7	14.40%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.180e-04	1.0000	1345.0	19.18%	3800.0	20.94%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-5.300e-05	1.0000	1357.0	19.35%	3850.5	21.21%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-5.200e-05	1.0000	296.0	4.22%	946.9	5.22%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-5.200e-05	1.0000	615.0	8.77%	1839.9	10.14%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-4.400e-05	1.0000	1998.0	28.49%	5558.4	30.63%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-3.600e-05	1.0000	2355.0	33.58%	6503.5	35.83%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-3.100e-05	1.0000	1161.0	16.55%	3335.7	18.38%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.800e-05	1.0000	2604.0	37.13%	7173.4	39.52%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.400e-05	1.0000	3334.0	47.53%	9080.7	50.03%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.300e-05	1.0000	1093.0	15.58%	3168.3	17.46%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.300e-05	1.0000	2130.0	30.37%	5936.2	32.71%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.100e-05	1.0000	421.0	6.00%	1320.4	7.27%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-9.000e-06	1.0000	2192.0	31.25%	6107.5	33.65%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-8.000e-06	1.0000	1114.0	15.88%	3233.5	17.82%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-8.000e-06	1.0000	46.0	0.66%	210.0	1.16%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-7.000e-06	1.0000	2411.0	34.37%	6688.4	36.85%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-7.000e-06	1.0000	1534.0	21.87%	4366.8	24.06%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-7.000e-06	1.0000	547.0	7.80%	1681.5	9.26%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-6.000e-06	1.0000	3186.0	45.42%	8716.8	48.03%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-4.000e-06	1.0000	1745.0	24.88%	4939.8	27.22%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-4.000e-06	1.0000	1759.0	25.08%	4977.7	27.43%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-4.000e-06	1.0000	2570.0	36.64%	7120.7	39.23%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-3.000e-06	1.0000	2425.0	34.57%	6745.9	37.17%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-3.000e-06	1.0000	2176.0	31.02%	6091.1	33.56%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-3.000e-06	1.0000	1801.0	25.68%	5098.6	28.09%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-3.000e-06	1.0000	1808.0	25.78%	5118.8	28.20%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-2.000e-06	1.0000	1430.0	20.39%	4111.6	22.65%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-2.000e-06	1.0000	594.0	8.47%	1830.7	10.09%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.000e-06	1.0000	2094.0	29.85%	5904.3	32.53%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.000e-06	1.0000	1634.0	23.30%	4681.1	25.79%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.000e-06	1.0000	665.0	9.48%	2044.7	11.27%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.000e-06	1.0000	2836.0	40.43%	7859.8	43.31%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-0.000e+00	1.0000	2149.0	30.64%	6076.4	33.48%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-0.000e+00	1.0000	1609.0	22.94%	4660.9	25.68%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-0.000e+00	1.0000	771.0	10.99%	2375.7	13.09%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-0.000e+00	1.0000	3468.0	49.44%	9552.6	52.63%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-0.000e+00	1.0000	1983.0	28.27%	5668.1	31.23%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e0	-0.000e+00	1.0000	2140.0	30.51%	6088.3	33.54%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-0.000e+00	1.0000	2014.0	28.71%	5757.6	31.72%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-0.000e+00	1.0000	2941.0	41.93%	8200.2	45.18%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-0.000e+00	1.0000	3416.0	48.70%	9439.2	52.01%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-0.000e+00	1.0000	2319.0	33.06%	6586.3	36.29%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-0.000e+00	1.0000	2387.0	34.03%	6773.1	37.32%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-0.000e+00	1.0000	2959.0	42.19%	8295.5	45.71%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-0.000e+00	1.0000	4628.0	65.98%	12582.2	69.32%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-0.000e+00	1.0000	1344.0	19.16%	4012.4	22.11%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-0.000e+00	1.0000	3045.0	43.41%	8541.8	47.06%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-0.000e+00	1.0000	2139.0	30.50%	6161.2	33.95%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-0.000e+00	1.0000	3583.0	51.08%	9945.0	54.79%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-0.000e+00	1.0000	4779.0	68.14%	12985.7	71.55%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-0.000e+00	1.0000	3777.0	53.85%	10460.6	57.63%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-0.000e+00	1.0000	2597.0	37.03%	7418.8	40.88%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-0.000e+00	1.0000	2906.0	41.43%	8254.1	45.48%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-0.000e+00	1.0000	3996.0	56.97%	11069.6	60.99%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	0.000e+00	1.0000	437.0	6.23%	2296.5	12.65%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	0.000e+00	1.0000	388.0	5.53%	2274.5	12.53%