Information for motif15


Reverse Opposite:

p-value:1e-7
log p-value:-1.750e+01
Information Content per bp:1.653
Number of Target Sequences with motif770.0
Percentage of Target Sequences with motif17.19%
Number of Background Sequences with motif3568.2
Percentage of Background Sequences with motif14.26%
Average Position of motif in Targets429.6 +/- 411.2bp
Average Position of motif in Background460.0 +/- 439.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AAGCAAGACT
ATGCCAGACN

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AAGCAAGACT
AAGGCAAGTGT

PB0139.1_Irf5_2/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AAGCAAGACT---
TTGACCGAGAATTCC

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AAGCAAGACT-----
CAAATCCAGACATCACA

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AAGCAAGACT-
---CCAGACAG

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AAGCAAGACT-
---BCAGACWA

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:AAGCAAGACT---
---CCAGACRSVB

PB0037.1_Isgf3g_1/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AAGCAAGACT--
CAAAATCGAAACTAA

PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------AAGCAAGACT
GCAGCCAAGCGTGACN

MA0014.2_PAX5/Jaspar

Match Rank:10
Score:0.54
Offset:-10
Orientation:forward strand
Alignment:----------AAGCAAGACT
GAGGGCAGCCAAGCGTGAC-