Information for motif25


Reverse Opposite:

p-value:1e-5
log p-value:-1.279e+01
Information Content per bp:1.447
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif0.27%
Number of Background Sequences with motif12.3
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets302.0 +/- 248.1bp
Average Position of motif in Background579.4 +/- 435.2bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0083.1_Irx3_1/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TAATACAGGT-----
ANTATTACATGTANNNN

PH0084.1_Irx3_2/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TAATACAGGT-----
NNTATTACATGTANNNT

PB0187.1_Tcf7_2/Jaspar

Match Rank:3
Score:0.67
Offset:-7
Orientation:reverse strand
Alignment:-------TAATACAGGT
NNNTTTNTAATACNG--

PB0185.1_Tcf1_2/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TAATACAGGT--
NNTAATCCNGNCNN

PH0086.1_Irx5/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TAATACAGGT-----
ANTNNTACATGTANNTN

PH0082.1_Irx2/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TAATACAGGT------
TAAATACATGTAAAATT

PB0024.1_Gcm1_1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TAATACAGGT----
NNNNATGCGGGTNNNN

PH0085.1_Irx4/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TAATACAGGT-----
NNTTTTACATGTANNNT

PH0087.1_Irx6/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TAATACAGGT-----
ANTTNTACATGTANTTN

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TAATACAGGT---
---NNCAGGTGNN