Information for motif29


Reverse Opposite:

p-value:1e-4
log p-value:-1.029e+01
Information Content per bp:1.787
Number of Target Sequences with motif832.0
Percentage of Target Sequences with motif18.57%
Number of Background Sequences with motif4086.6
Percentage of Background Sequences with motif16.33%
Average Position of motif in Targets488.8 +/- 453.6bp
Average Position of motif in Background505.3 +/- 476.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.27
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:1
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:GCTCACGC-
---CACGCA

MA0506.1_NRF1/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GCTCACGC--
TGCGCAGGCGC

MA0117.1_Mafb/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCTCACGC
GCTGACGC

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GCTCACGC--
TBGCACGCAA

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GCTCACGC
NGCTN----

Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCTCACGC---
CNGTCACGCCAC

MA0024.2_E2F1/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCTCACGC---
CCTCCCGCCCN

Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:8
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GCTCACGC-
YCCGCCCACGCN

NRF1/Promoter/Homer

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCTCACGC----
GCGCATGCGCAC

MA0067.1_Pax2/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCTCACGC
AGTCACGC