Information for motif36


Reverse Opposite:

p-value:1e-1
log p-value:-2.777e+00
Information Content per bp:1.976
Number of Target Sequences with motif77.0
Percentage of Target Sequences with motif1.72%
Number of Background Sequences with motif358.1
Percentage of Background Sequences with motif1.43%
Average Position of motif in Targets376.1 +/- 282.0bp
Average Position of motif in Background482.2 +/- 456.8bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0132.1_Pdx1/Jaspar

Match Rank:1
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:AAAATTAGCCAG
--AATTAG----

MA0075.1_Prrx2/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AAAATTAGCCAG
--AATTA-----

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AAAATTAGCCAG
DCYAAAAATAGM---

MA0052.2_MEF2A/Jaspar

Match Rank:4
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----AAAATTAGCCAG
AGCTAAAAATAGCAT-

MA0497.1_MEF2C/Jaspar

Match Rank:5
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----AAAATTAGCCAG
ATGCTAAAAATAGAA--

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AAAATTAGCCAG
-TAATTAGN---

PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AAAATTAGCCAG---
NNAATTAGTCACGGT

MA0046.1_HNF1A/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----AAAATTAGCCAG
GNTAATNATTAACC--

PB0002.1_Arid5a_1/Jaspar

Match Rank:9
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------AAAATTAGCCAG
NNTNNCAATATTAG----

PH0132.1_Pax6/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----AAAATTAGCCAG
GNNAATTAATTAATCA-