Information for motif42


Reverse Opposite:

p-value:1e-1
log p-value:-3.438e+00
Information Content per bp:1.651
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif98.9
Percentage of Background Sequences with motif0.56%
Average Position of motif in Targets441.7 +/- 417.4bp
Average Position of motif in Background668.2 +/- 602.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CACBKYTGGCCC-
TGACCTTTGCCCCA

MA0163.1_PLAG1/Jaspar

Match Rank:2
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CACBKYTGGCCC-
CCCCCTTGGGCCCC

MA0065.2_PPARG::RXRA/Jaspar

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CACBKYTGGCCC--
TGACCTTTGCCCTAN

MA0504.1_NR2C2/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CACBKYTGGCCC--
TGACCTCTGACCCCN

RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CACBKYTGGCCC-
TGACCTTTGCCCTA

PB0112.1_E2F2_2/Jaspar

Match Rank:6
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CACBKYTGGCCC------
-NNNNTTGGCGCCGANNN

TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:7
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-CACBKYTGGCCC-
TGACCTTTGACCTC

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---CACBKYTGGCCC
TGACACCT-------

PB0113.1_E2F3_2/Jaspar

Match Rank:9
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:CACBKYTGGCCC------
-NNNNTTGGCGCCGANNN

PB0091.1_Zbtb3_1/Jaspar

Match Rank:10
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----CACBKYTGGCCC
AATCGCACTGCATTCCG