| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File | |
| 1 | | CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer | 1e-58 | -1.358e+02 | 0.0000 | 614.0 | 13.73% | 536.4 | 6.82% | motif file (matrix) | |
| 2 | | BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-34 | -7.961e+01 | 0.0000 | 688.0 | 15.38% | 749.5 | 9.53% | motif file (matrix) |