Information for motif13


Reverse Opposite:

p-value:1e-3
log p-value:-9.157e+00
Information Content per bp:1.747
Number of Target Sequences with motif666.0
Percentage of Target Sequences with motif12.31%
Number of Background Sequences with motif1904.9
Percentage of Background Sequences with motif10.72%
Average Position of motif in Targets409.6 +/- 403.5bp
Average Position of motif in Background448.5 +/- 430.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.70
Offset:2
Orientation:forward strand
Alignment:KCCAGSCTGG
--TWGTCTGV

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:KCCAGSCTGG
--CTGTCTGG

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:KCCAGSCTGG
VBSYGTCTGG

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--KCCAGSCTGG-----
NNTNNTGTCTGGNNTNG

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:5
Score:0.59
Offset:3
Orientation:forward strand
Alignment:KCCAGSCTGG---
---GGTCTGGCAT

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:KCCAGSCTGG
----NGCTN-

ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:KCCAGSCTGG
--AGGCCTAG

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:forward strand
Alignment:KCCAGSCTGG---
--AAGGCAAGTGT

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:KCCAGSCTGG----
ACATGCCCGGGCAT

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:KCCAGSCTGG
--AGGCCTNG