Information for motif16


Reverse Opposite:

p-value:1e-3
log p-value:-7.149e+00
Information Content per bp:1.943
Number of Target Sequences with motif59.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif124.3
Percentage of Background Sequences with motif0.70%
Average Position of motif in Targets301.7 +/- 228.5bp
Average Position of motif in Background363.6 +/- 404.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0163.1_Six3/Jaspar

Match Rank:1
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GTGAGACTCTGT-
ANANGTGATACCCTATN

MA0442.1_SOX10/Jaspar

Match Rank:2
Score:0.54
Offset:6
Orientation:forward strand
Alignment:GTGAGACTCTGT
------CTTTGT

PB0203.1_Zfp691_2/Jaspar

Match Rank:3
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GTGAGACTCTGT----
TACGAGACTCCTCTAAC

PH0165.1_Six6_1/Jaspar

Match Rank:4
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GTGAGACTCTGT-
ANANNTGATACCCTATN

PH0162.1_Six2/Jaspar

Match Rank:5
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GTGAGACTCTGT-
ANANGTGATACCCCATT

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.53
Offset:7
Orientation:forward strand
Alignment:GTGAGACTCTGT-
-------GCTGTG

PB0059.1_Six6_1/Jaspar

Match Rank:7
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----GTGAGACTCTGT-
ANANNTGATACCCNATN

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:8
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GTGAGACTCTGT
AGGTGTGAAM----

PH0161.1_Six1/Jaspar

Match Rank:9
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----GTGAGACTCTGT-
ANNNATGATACCCCATC

PH0166.1_Six6_2/Jaspar

Match Rank:10
Score:0.50
Offset:-4
Orientation:reverse strand
Alignment:----GTGAGACTCTGT-
AATNTTGATACCCTATN