Information for motif17


Reverse Opposite:

p-value:1e-2
log p-value:-6.794e+00
Information Content per bp:1.982
Number of Target Sequences with motif351.0
Percentage of Target Sequences with motif6.49%
Number of Background Sequences with motif979.2
Percentage of Background Sequences with motif5.51%
Average Position of motif in Targets357.7 +/- 330.4bp
Average Position of motif in Background504.4 +/- 474.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.86
Offset:-4
Orientation:forward strand
Alignment:----CCACTGCACT---
AATCGCACTGCATTCCG

PH0113.1_Nkx2-4/Jaspar

Match Rank:2
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CCACTGCACT--
TAAGCCACTTGAAATT

MA0122.1_Nkx3-2/Jaspar

Match Rank:3
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CCACTGCACT---
----NCCACTTAN

MA0130.1_ZNF354C/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCACTGCACT
ATCCAC------

PH0171.1_Nkx2-1/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CCACTGCACT--
TAAGCCACTTGAAATT

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCACTGCACT
RSCACTYRAG-

PH0114.1_Nkx2-5/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CCACTGCACT--
TAAGCCACTTGAATTT

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCACTGCACT
AASCACTCAA--

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:9
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CCACTGCACT--
CTTAACCACTTAAGGAT

PH0115.1_Nkx2-6/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CCACTGCACT--
TAAGCCACTTAACATT