Information for motif18


Reverse Opposite:

p-value:1e-2
log p-value:-5.558e+00
Information Content per bp:1.843
Number of Target Sequences with motif563.0
Percentage of Target Sequences with motif10.40%
Number of Background Sequences with motif1658.5
Percentage of Background Sequences with motif9.33%
Average Position of motif in Targets414.5 +/- 382.2bp
Average Position of motif in Background448.1 +/- 421.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0041.1_Foxd3/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:AAACATACAA--
AAACAAACATTC

MA0042.1_FOXI1/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:AAACATACAA--
AAACAAACANNC

Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AAACATACAA---
ATTTGCATACAATGG

PB0016.1_Foxj1_1/Jaspar

Match Rank:4
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----AAACATACAA-
AAAGTAAACAAAAATT

MA0497.1_MEF2C/Jaspar

Match Rank:5
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----AAACATACAA
ATGCTAAAAATAGAA

MF0005.1_Forkhead_class/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AAACATACAA
AAATAAACA-

POL007.1_BREd/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AAACATACAA
-NANANAC--

PB0146.1_Mafk_2/Jaspar

Match Rank:8
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AAACATACAA--
GAAAAAATTGCAAGG

MA0040.1_Foxq1/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AAACATACAA--
-AATAAACAATN

MA0033.1_FOXL1/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AAACATACAA
TATACATA---