Information for motif19


Reverse Opposite:

p-value:1e-2
log p-value:-5.282e+00
Information Content per bp:1.530
Number of Target Sequences with motif424.0
Percentage of Target Sequences with motif7.84%
Number of Background Sequences with motif1231.8
Percentage of Background Sequences with motif6.93%
Average Position of motif in Targets439.1 +/- 433.8bp
Average Position of motif in Background435.6 +/- 430.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0114.2_HNF4A/Jaspar

Match Rank:1
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--GCACTTTG-----
CTGGACTTTGGACTC

MA0484.1_HNF4G/Jaspar

Match Rank:2
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-GCACTTTG------
TGGACTTTGNNCTCN

HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:3
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-GCACTTTG-------
TGGACTTTGNNCTNTG

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:4
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GCACTTTG
AAGCACTTAA

PB0134.1_Hnf4a_2/Jaspar

Match Rank:5
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----GCACTTTG---
NNATTGGACTTTNGNN

PB0146.1_Mafk_2/Jaspar

Match Rank:6
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----GCACTTTG---
CCTTGCAATTTTTNN

MA0122.1_Nkx3-2/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GCACTTTG
NCCACTTAN

MA0017.1_NR2F1/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCACTTTG-----
TGACCTTTGAACCT

MA0442.1_SOX10/Jaspar

Match Rank:9
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GCACTTTG-
---CTTTGT

MA0512.1_Rxra/Jaspar

Match Rank:10
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GCACTTTG
NCTGACCTTTG