Information for motif2


Reverse Opposite:

p-value:1e-9
log p-value:-2.133e+01
Information Content per bp:1.492
Number of Target Sequences with motif468.0
Percentage of Target Sequences with motif8.65%
Number of Background Sequences with motif1156.2
Percentage of Background Sequences with motif6.50%
Average Position of motif in Targets390.9 +/- 399.3bp
Average Position of motif in Background452.4 +/- 438.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0030.1_Hnf4a_1/Jaspar

Match Rank:1
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GGGCTCAAGCAA
CTCCAGGGGTCAATTGA

PB0057.1_Rxra_1/Jaspar

Match Rank:2
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GGGCTCAAGCAA
NTNNNGGGGTCANGNNN

CHR/Cell-Cycle-Exp/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GGGCTCAAGCAA
CGGTTTCAAA---

MA0524.1_TFAP2C/Jaspar

Match Rank:4
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GGGCTCAAGCAA
CATGGCCCCAGGGCA

PB0118.1_Esrra_2/Jaspar

Match Rank:5
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GGGCTCAAGCAA
GGCGAGGGGTCAAGGGC

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GGGCTCAAGCAA-
-GCCTCAGGGCAT

MA0099.2_JUN::FOS/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GGGCTCAAGCAA
TGACTCA-----

MA0505.1_Nr5a2/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GGGCTCAAGCAA---
AAGTTCAAGGTCAGC

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GGGCTCAAGCAA-
-SCCTSAGGSCAW

MA0003.2_TFAP2A/Jaspar

Match Rank:10
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GGGCTCAAGCAA
CATTGCCTCAGGGCA