Information for motif23


Reverse Opposite:

p-value:1e0
log p-value:-2.227e+00
Information Content per bp:1.414
Number of Target Sequences with motif75.0
Percentage of Target Sequences with motif1.39%
Number of Background Sequences with motif212.6
Percentage of Background Sequences with motif1.20%
Average Position of motif in Targets324.9 +/- 329.8bp
Average Position of motif in Background463.5 +/- 378.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0090.1_Zbtb12_1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:HNGGTCTTGAWB-----
NNGATCTAGAACCTNNN

MA0505.1_Nr5a2/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-HNGGTCTTGAWB--
GCTGACCTTGAACTN

PH0067.1_Hoxc12/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-HNGGTCTTGAWB----
TTAGGTCGTAAAATTTC

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:HNGGTCTTGAWB
-TGACCTTGAN-

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---HNGGTCTTGAWB--
NNTNNTGTCTGGNNTNG

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:6
Score:0.60
Offset:2
Orientation:forward strand
Alignment:HNGGTCTTGAWB
--GGTCTGGCAT

PH0076.1_Hoxd11/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-HNGGTCTTGAWB----
TAAGGTCGTAAAATCCT

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:HNGGTCTTGAWB
-CTGTCTGG---

PH0077.1_Hoxd12/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-HNGGTCTTGAWB----
CAAGGTCGTAAAATCTT

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:10
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:HNGGTCTTGAWB
---GTCATN---