Information for motif25


Reverse Opposite:

p-value:1e0
log p-value:-1.748e+00
Information Content per bp:1.805
Number of Target Sequences with motif398.0
Percentage of Target Sequences with motif7.36%
Number of Background Sequences with motif1248.6
Percentage of Background Sequences with motif7.02%
Average Position of motif in Targets412.0 +/- 404.8bp
Average Position of motif in Background463.9 +/- 434.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0139.1_Irf5_2/Jaspar

Match Rank:1
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--GAGCGAGA-----
TTGACCGAGAATTCC

PB0140.1_Irf6_2/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GAGCGAGA-----
NNNACCGAGAGTNNN

PB0138.1_Irf4_2/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GAGCGAGA-----
GNNACCGAGAATNNN

PB0114.1_Egr1_2/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GAGCGAGA----
TGCGGAGTGGGACTGG

MA0024.2_E2F1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GAGCGAGA--
CGGGCGGGAGG

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GAGCGAGA---
-GGCGGGAARN

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GAGCGAGA--
AGGTGHCAGACA

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GAGCGAGA---
AGGTGNCAGACAG

POL013.1_MED-1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GAGCGAGA
CGGAGC----

MA0471.1_E2F6/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GAGCGAGA---
GGGCGGGAAGG