Information for motif27


Reverse Opposite:

p-value:1e0
log p-value:-1.329e+00
Information Content per bp:1.777
Number of Target Sequences with motif220.0
Percentage of Target Sequences with motif4.07%
Number of Background Sequences with motif692.2
Percentage of Background Sequences with motif3.89%
Average Position of motif in Targets366.2 +/- 344.2bp
Average Position of motif in Background478.9 +/- 443.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:1
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--TGGTATGC
CCWGGAATGY

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TGGTATGC
NCTGGAATGC

Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:3
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---TGGTATGC----
CCATTGTATGCAAAT

PB0098.1_Zfp410_1/Jaspar

Match Rank:4
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----TGGTATGC----
TATTATGGGATGGATAA

PB0208.1_Zscan4_2/Jaspar

Match Rank:5
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TGGTATGC----
NNNNTTGTGTGCTTNN

MA0090.1_TEAD1/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TGGTATGC-
CNGAGGAATGTG

PH0145.1_Pou2f3/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGGTATGC--------
TTGTATGCAAATTAGA

MA0142.1_Pou5f1::Sox2/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TGGTATGC----
CTTTGTTATGCAAAT

PB0120.1_Foxj1_2/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TGGTATGC---
GTNTTGTTGTGANNT

OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TGGTATGC----
CATTGTTATGCAAAT