Information for motif5


Reverse Opposite:

p-value:1e-6
log p-value:-1.550e+01
Information Content per bp:1.723
Number of Target Sequences with motif796.0
Percentage of Target Sequences with motif14.71%
Number of Background Sequences with motif2199.1
Percentage of Background Sequences with motif12.37%
Average Position of motif in Targets391.7 +/- 367.5bp
Average Position of motif in Background470.6 +/- 444.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL003.1_GC-box/Jaspar

Match Rank:1
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AAACCCCGTCTC--
NAGCCCCGCCCCCN

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.55
Offset:5
Orientation:forward strand
Alignment:AAACCCCGTCTC-
-----CTGTCTGG

MA0079.3_SP1/Jaspar

Match Rank:3
Score:0.53
Offset:2
Orientation:forward strand
Alignment:AAACCCCGTCTC-
--GCCCCGCCCCC

MA0516.1_SP2/Jaspar

Match Rank:4
Score:0.53
Offset:2
Orientation:forward strand
Alignment:AAACCCCGTCTC-----
--GCCCCGCCCCCTCCC

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.53
Offset:3
Orientation:forward strand
Alignment:AAACCCCGTCTC-
---VBSYGTCTGG

PB0200.1_Zfp187_2/Jaspar

Match Rank:6
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AAACCCCGTCTC---
GAGCCCTTGTCCCTAA

PH0122.1_Obox2/Jaspar

Match Rank:7
Score:0.52
Offset:-6
Orientation:reverse strand
Alignment:------AAACCCCGTCTC
ATAGTTAATCCCCCTCA-

PH0121.1_Obox1/Jaspar

Match Rank:8
Score:0.52
Offset:-6
Orientation:reverse strand
Alignment:------AAACCCCGTCTC
NTAGTTAATCCCCTTAN-

MF0003.1_REL_class/Jaspar

Match Rank:9
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---AAACCCCGTCTC
GGAAATCCCC-----

Sp1(Zf)/Promoter/Homer

Match Rank:10
Score:0.51
Offset:1
Orientation:forward strand
Alignment:AAACCCCGTCTC-
-GGCCCCGCCCCC