Information for motif6


Reverse Opposite:

p-value:1e-6
log p-value:-1.430e+01
Information Content per bp:1.729
Number of Target Sequences with motif403.0
Percentage of Target Sequences with motif7.45%
Number of Background Sequences with motif1037.9
Percentage of Background Sequences with motif5.84%
Average Position of motif in Targets403.7 +/- 419.1bp
Average Position of motif in Background465.2 +/- 437.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GTCCCAGCTACT
CTGTTCCTGG----

MA0522.1_Tcf3/Jaspar

Match Rank:2
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GTCCCAGCTACT-
--CACAGCTGCAG

MA0138.2_REST/Jaspar

Match Rank:3
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------GTCCCAGCTACT---
GGCGCTGTCCATGGTGCTGAA

PB0195.1_Zbtb3_2/Jaspar

Match Rank:4
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GTCCCAGCTACT-
NNNNTGCCAGTGATTG

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:5
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------GTCCCAGCTACT--
GGAGCTGTCCATGGTGCTGA

MA0056.1_MZF1_1-4/Jaspar

Match Rank:6
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GTCCCAGCTACT
-TCCCCA-----

Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GTCCCAGCTACT-
---NCAGCTGCTG

Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:8
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GTCCCAGCTACT-
---HCAGCTGDTN

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GTCCCAGCTACT
HTTTCCCASG----

MA0048.1_NHLH1/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GTCCCAGCTACT-
-GCGCAGCTGCGT