Information for motif9


Reverse Opposite:

p-value:1e-5
log p-value:-1.155e+01
Information Content per bp:1.949
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif0.22%
Number of Background Sequences with motif8.3
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets463.0 +/- 334.7bp
Average Position of motif in Background563.0 +/- 441.8bp
Strand Bias (log2 ratio + to - strand density)-1.8
Multiplicity (# of sites on avg that occur together)1.83
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0026.1_Gm397_1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CAGCAGTGCACA-----
CAGATGTGCACATACGT

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGTGCACA
CACAGCAGGGGG--

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGTGCACA
CCACACAGCAGGAGA--

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGTGCACA
CCACACAGCAGGAGA--

PB0099.1_Zfp691_1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CAGCAGTGCACA----
CGAACAGTGCTCACTAT

PB0104.1_Zscan4_1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CAGCAGTGCACA-----
TACATGTGCACATAAAA

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGTGCACA
GAGCACAGCAGGACA--

Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CAGCAGTGCACA
NAHCAGCTGD-----

MA0522.1_Tcf3/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGTGCACA
NTGCAGCTGTG----

PB0091.1_Zbtb3_1/Jaspar

Match Rank:10
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CAGCAGTGCACA-
NNNANTGCAGTGCNNTT