Information for motif9


Reverse Opposite:

p-value:1e-1
log p-value:-2.730e+00
Information Content per bp:1.673
Number of Target Sequences with motif163.0
Percentage of Target Sequences with motif3.02%
Number of Background Sequences with motif215.3
Percentage of Background Sequences with motif2.67%
Average Position of motif in Targets365.2 +/- 412.4bp
Average Position of motif in Background510.2 +/- 450.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0146.2_Zfx/Jaspar

Match Rank:1
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GGAGGCTGARGT---
-CAGGCCNNGGCCNN

ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGAGGCTGARGT
ACAGGATGTGGT

MA0117.1_Mafb/Jaspar

Match Rank:3
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GGAGGCTGARGT
----GCTGACGC

MA0516.1_SP2/Jaspar

Match Rank:4
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GGAGGCTGARGT
GGGNGGGGGCGGGGC-

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GGAGGCTGARGT
-TWGTCTGV---

MA0162.2_EGR1/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GGAGGCTGARGT
GGCGGGGGCGGGGG-

MA0079.3_SP1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GGAGGCTGARGT
GGGGGCGGGGC-

POL002.1_INR/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GGAGGCTGARGT
-NNNANTGA---

PB0203.1_Zfp691_2/Jaspar

Match Rank:9
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------GGAGGCTGARGT
NTNNNAGGAGTCTCNTN-

MA0528.1_ZNF263/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GGAGGCTGARGT------
GGAGGAGGAGGGGGAGGAGGA