Information for motif1


Reverse Opposite:

p-value:1e-3
log p-value:-9.134e+00
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif6.61%
Average Position of motif in Targets575.5 +/- 383.5bp
Average Position of motif in Background511.5 +/- 80.7bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:CTGGGATTAC
-NGGGATTA-

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:2
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:CTGGGATTAC-
---GGATTAGC

PH0137.1_Pitx1/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CTGGGATTAC----
TTAGAGGGATTAACAAT

PB0185.1_Tcf1_2/Jaspar

Match Rank:4
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CTGGGATTAC-
TTGCCCGGATTAGG

PH0124.1_Obox5_1/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CTGGGATTAC-----
TAGAGGGATTAAATTTC

PH0130.1_Otx2/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CTGGGATTAC-----
TGTAGGGATTAATTGTC

PH0035.1_Gsc/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CTGGGATTAC-----
NNAAGGGATTAACGANT

PH0139.1_Pitx3/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTGGGATTAC-----
AGGGGGATTAGCTGCC

PH0138.1_Pitx2/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CTGGGATTAC-----
TGAAGGGATTAATCATC

PH0123.1_Obox3/Jaspar

Match Rank:10
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CTGGGATTAC----
TGAGGGGGATTAACTAT