Information for motif5


Reverse Opposite:

p-value:1e-3
log p-value:-7.054e+00
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif13.18%
Average Position of motif in Targets329.6 +/- 329.3bp
Average Position of motif in Background600.3 +/- 424.5bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0493.1_Klf1/Jaspar

Match Rank:1
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:ACTTTGGGTG-----
----TGGGTGTGGCN

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:ACTTTGGGTG----
----TGGGTGTGGC

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:3
Score:0.59
Offset:3
Orientation:forward strand
Alignment:ACTTTGGGTG-----
---NTGGGTGTGGCC

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:ACTTTGGGTG---
---TTGCGTGCVA

PB0020.1_Gabpa_1/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----ACTTTGGGTG---
NNNNACTTCCGGTATNN

GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:ACTTTGGGTG----
--CGTGGGTGGTCC

ETS(ETS)/Promoter/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:ACTTTGGGTG
ACTTCCGGTT

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:ACTTTGGGTG---
--CTTGAGTGGCT

PB0092.1_Zbtb7b_1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-ACTTTGGGTG----
ATTTTNGGGGGGCNN

PB0167.1_Sox13_2/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:ACTTTGGGTG-------
GTATTGGGTGGGTAATT