Information for motif6


Reverse Opposite:

p-value:1e-3
log p-value:-7.054e+00
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif13.12%
Average Position of motif in Targets461.5 +/- 376.4bp
Average Position of motif in Background993.1 +/- 33.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0146.2_Zfx/Jaspar

Match Rank:1
Score:0.80
Offset:-1
Orientation:reverse strand
Alignment:-AGGCCGGG-----
CAGGCCNNGGCCNN

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.75
Offset:0
Orientation:forward strand
Alignment:AGGCCGGG
AGGCCTNG

ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--AGGCCGGG
CTAGGCCT--

PB0039.1_Klf7_1/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AGGCCGGG-----
NNAGGGGCGGGGTNNA

POL011.1_XCPE1/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AGGCCGGG---
-GGGCGGGACC

Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AGGCCGGG-
-GGGGGGGG

MA0516.1_SP2/Jaspar

Match Rank:7
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------AGGCCGGG-
GGGNGGGGGCGGGGC

MA0599.1_KLF5/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGGCCGGG--
GGGGNGGGGC

PB0164.1_Smad3_2/Jaspar

Match Rank:9
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----AGGCCGGG----
NAGANTGGCGGGGNGNA

PB0107.1_Ascl2_2/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AGGCCGGG-----
NATNGGGNGGGGANAN