Information for motif3


Reverse Opposite:

p-value:1e-2
log p-value:-6.372e+00
Information Content per bp:1.530
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif92.31%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif100.00%
Average Position of motif in Targets311.0 +/- 279.1bp
Average Position of motif in Background350.0 +/- 256.5bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)3.67
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TCAGGTAC--
GCACGTACCC

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TCAGGTAC------
ACTCCAAGTACTTGGAA

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TCAGGTAC-
NNCAGGTGNN

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TCAGGTAC-----
ATCCACAGGTGCGAAAA

MA0103.2_ZEB1/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TCAGGTAC--
-CAGGTGAGG

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TCAGGTAC----
-CAGGTAAGTAT

PB0094.1_Zfp128_1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TCAGGTAC--------
TTNGGGTACGCCNNANN

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TCAGGTAC--
CCAGGAACAG

PH0116.1_Nkx2-9/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TCAGGTAC------
NATTTAAGTACTTNAAA

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TCAGGTAC
BGCACGTA-