Information for motif7


Reverse Opposite:

p-value:1e0
log p-value:-2.014e+00
Information Content per bp:1.530
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif69.23%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif55.81%
Average Position of motif in Targets314.8 +/- 298.8bp
Average Position of motif in Background316.6 +/- 163.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)2.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0485.1_Hoxc9/Jaspar

Match Rank:1
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----ATAAATGA-
GGCCATAAATCAC

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----ATAAATGA
GGCCATAAATCA

MA0594.1_Hoxa9/Jaspar

Match Rank:3
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---ATAAATGA
GCCATAAATCA

PH0150.1_Pou4f3/Jaspar

Match Rank:4
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----ATAAATGA----
AGTTATTAATGAGGTC

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:5
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----ATAAATGA
GGCCATAAATCA

PB0028.1_Hbp1_1/Jaspar

Match Rank:6
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---ATAAATGA-----
ACTATGAATGAATGAT

POL012.1_TATA-Box/Jaspar

Match Rank:7
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--ATAAATGA-----
GTATAAAAGGCGGGG

MA0108.2_TBP/Jaspar

Match Rank:8
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--ATAAATGA-----
GTATAAAAGGCGGGG

PB0178.1_Sox8_2/Jaspar

Match Rank:9
Score:0.68
Offset:-6
Orientation:reverse strand
Alignment:------ATAAATGA
NNTNTCATGAATGT

PH0019.1_Dbx2/Jaspar

Match Rank:10
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----ATAAATGA----
TTTAATTAATTAATTC