Information for motif1


Reverse Opposite:

p-value:1e-18
log p-value:-4.204e+01
Information Content per bp:1.870
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.50%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets438.5 +/- 369.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0040.1_Foxq1/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TATAAATAATGT
AATAAACAATN-

PB0019.1_Foxl1_1/Jaspar

Match Rank:2
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----TATAAATAATGT-
TAAATGTAAACAAAGGT

MA0087.1_Sox5/Jaspar

Match Rank:3
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TATAAATAATGT
---NAACAAT--

MA0084.1_SRY/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TATAAATAATGT
-GTAAACAAT--

PB0080.1_Tbp_1/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TATAAATAATGT
NANTTATATATAANGN

PH0095.1_Lhx5/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TATAAATAATGT-
ANNATTTAATTAATTNN

PH0101.1_Lmx1b/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TATAAATAATGT-
AGTTTTTAATTAATTTG

PB0015.1_Foxa2_1/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TATAAATAATGT-
AAAAAGTAAACAAAGAC

PB0017.1_Foxj3_1/Jaspar

Match Rank:9
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TATAAATAATGT-
AAAAAGTAAACAAACAC

PH0093.1_Lhx3/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TATAAATAATGT-
NNTATTTAATTAATTNN