Information for motif12


Reverse Opposite:

p-value:1e-10
log p-value:-2.462e+01
Information Content per bp:1.593
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets513.3 +/- 355.4bp
Average Position of motif in Background153.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0084.1_Irx3_2/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCTTAGATGTAA----
AATATACATGTAATATA

PH0083.1_Irx3_1/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCTTAGATGTAA----
AAAATACATGTAATACT

PB0082.1_Tcf3_1/Jaspar

Match Rank:3
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----GCTTAGATGTAA-
NNTTCCTTTGATCTANA

PH0085.1_Irx4/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCTTAGATGTAA----
AATATACATGTAAAACA

PH0082.1_Irx2/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GCTTAGATGTAA---
ANTNTTACATGTATNTA

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GCTTAGATGTAA
TNCCTTTGATGT--

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:7
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GCTTAGATGTAA-
ATTTCCTTTGATCTATA

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GCTTAGATGTAA
CCTTTGATGT--

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GCTTAGATGTAA
CCTTTGAWGT--

PB0083.1_Tcf7_1/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GCTTAGATGTAA-
NNTTCCTTTGATCTNNA