Information for motif17


Reverse Opposite:

p-value:1e-10
log p-value:-2.361e+01
Information Content per bp:1.721
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif2.80%
Number of Background Sequences with motif15.5
Percentage of Background Sequences with motif0.62%
Average Position of motif in Targets302.4 +/- 209.0bp
Average Position of motif in Background644.8 +/- 445.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0001.1_Arid3a_1/Jaspar

Match Rank:1
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---GTTTGATCAAAT--
NNNTTTTAATTAANNNN

MA0151.1_ARID3A/Jaspar

Match Rank:2
Score:0.66
Offset:5
Orientation:forward strand
Alignment:GTTTGATCAAAT
-----ATTAAA-

PH0016.1_Cux1_1/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GTTTGATCAAAT--
ACCGGTTGATCACCTGA

PH0014.1_Cphx/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GTTTGATCAAAT----
--ATGATCGAATCAAA

PB0082.1_Tcf3_1/Jaspar

Match Rank:5
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----GTTTGATCAAAT
NNTTCCTTTGATCTANA

PB0040.1_Lef1_1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTTTGATCAAAT-----
NANAGATCAAAGGGNNN

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GTTTGATCAAAT-----
NNNAGATCAAAGGANNN

PH0100.1_Lmx1a/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GTTTGATCAAAT--
NNTTTTTAATTAATTCG

PB0083.1_Tcf7_1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GTTTGATCAAAT-----
TATAGATCAAAGGAAAA

PH0075.1_Hoxd10/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GTTTGATCAAAT----
AATGCAATAAAATTTAT