Information for motif19


Reverse Opposite:

p-value:1e-9
log p-value:-2.236e+01
Information Content per bp:1.978
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.50%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets460.9 +/- 358.5bp
Average Position of motif in Background734.2 +/- 359.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0061.1_Sox11_1/Jaspar

Match Rank:1
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----TCCTTGTTCT---
NNNTCCTTTGTTCTNNN

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----TCCTTGTTCT---
TNNTCCTTTGTTCTNNT

PB0062.1_Sox12_1/Jaspar

Match Rank:3
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TCCTTGTTCT----
TAATTGTTCTAAAC

MA0515.1_Sox6/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TCCTTGTTCT
CCATTGTTTT

PB0200.1_Zfp187_2/Jaspar

Match Rank:5
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TCCTTGTTCT---
GAGCCCTTGTCCCTAA

PB0072.1_Sox5_1/Jaspar

Match Rank:6
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TCCTTGTTCT---
NNTTTATTGTTCTNNN

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TCCTTGTTCT
NCCATTGTTC-

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TCCTTGTTCT
CCATTGTTNY

PB0063.1_Sox13_1/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TCCTTGTTCT---
AANTTATTGTTCTNNA

PB0070.1_Sox30_1/Jaspar

Match Rank:10
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TCCTTGTTCT--
ANNTCCATTGTTCNNN