Information for motif2


Reverse Opposite:

p-value:1e-17
log p-value:-3.990e+01
Information Content per bp:1.849
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.00%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets416.4 +/- 308.1bp
Average Position of motif in Background585.6 +/- 115.9bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0067.1_Sox18_1/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CTATAAAACAAT----
NNTNANAACAATTNNA

PB0073.1_Sox7_1/Jaspar

Match Rank:2
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CTATAAAACAAT---------
AATAAAGAACAATAGAATTTCA

MA0084.1_SRY/Jaspar

Match Rank:3
Score:0.73
Offset:3
Orientation:forward strand
Alignment:CTATAAAACAAT
---GTAAACAAT

MA0087.1_Sox5/Jaspar

Match Rank:4
Score:0.73
Offset:5
Orientation:reverse strand
Alignment:CTATAAAACAAT
-----NAACAAT

PB0062.1_Sox12_1/Jaspar

Match Rank:5
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CTATAAAACAAT--
NTTNAGAACAATTA

PB0074.1_Sox8_1/Jaspar

Match Rank:6
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CTATAAAACAAT------
-TNNAGAACAATANATNN

PB0065.1_Sox15_1/Jaspar

Match Rank:7
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CTATAAAACAAT------
-TAGTGAACAATAGATTT

PB0072.1_Sox5_1/Jaspar

Match Rank:8
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CTATAAAACAAT-----
-TTTAGAACAATAAAAT

MF0011.1_HMG_class/Jaspar

Match Rank:9
Score:0.69
Offset:6
Orientation:reverse strand
Alignment:CTATAAAACAAT
------AACAAT

PB0183.1_Sry_2/Jaspar

Match Rank:10
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CTATAAAACAAT-----
TCACGGAACAATAGGTG