Information for motif25


Reverse Opposite:

p-value:1e-8
log p-value:-1.890e+01
Information Content per bp:1.530
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets402.6 +/- 255.7bp
Average Position of motif in Background629.4 +/- 503.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:1
Score:0.67
Offset:3
Orientation:forward strand
Alignment:AGCAAACCCCAA-
---AAACCACANN

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:2
Score:0.67
Offset:2
Orientation:forward strand
Alignment:AGCAAACCCCAA
--NAAACCACAG

MA0511.1_RUNX2/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AGCAAACCCCAA-----
--CAAACCACAAACCCC

MA0002.2_RUNX1/Jaspar

Match Rank:4
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AGCAAACCCCAA--
---AAACCACAGAN

PB0201.1_Zfp281_2/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGCAAACCCCAA-----
AGGAGACCCCCAATTTG

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AGCAAACCCCAA--
--NWAACCACADNN

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:7
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:AGCAAACCCCAA-
---AAACCACAGC

MA0101.1_REL/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AGCAAACCCCAA
-GGAAANCCCC-

MA0107.1_RELA/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGCAAACCCCAA
-GGAAATTCCC-

MF0003.1_REL_class/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGCAAACCCCAA
GGAAATCCCC--