Information for motif27


Reverse Opposite:

p-value:1e-8
log p-value:-1.844e+01
Information Content per bp:1.945
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.00%
Number of Background Sequences with motif10.2
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets296.4 +/- 268.9bp
Average Position of motif in Background311.6 +/- 309.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0137.3_STAT1/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TTTTCAGGGA--
-TTTCCAGGAAA

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:2
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----TTTTCAGGGA-
NNNCTTTCCAGGAAA

MA0463.1_Bcl6/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TTTTCAGGGA-
NGCTTTCTAGGAAN

MA0144.2_STAT3/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TTTTCAGGGA--
-CTTCTGGGAAA

MA0518.1_Stat4/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TTTTCAGGGA-----
-TTTCCAGGAAATGG

MA0519.1_Stat5a::Stat5b/Jaspar

Match Rank:6
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TTTTCAGGGA---
--TTCTTGGAAAN

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TTTTCAGGGA-
-CTTCCNGGAA

STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TTTTCAGGGA---
-TTTCCNGGAAAN

STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTTTCAGGGA----
ATTTCCNGGAAATN

PB0006.1_Bcl6b_1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TTTTCAGGGA----
TCTTTCGAGGAATTTG