Information for motif28


Reverse Opposite:

p-value:1e-8
log p-value:-1.844e+01
Information Content per bp:1.927
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.00%
Number of Background Sequences with motif10.2
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets264.2 +/- 264.6bp
Average Position of motif in Background738.2 +/- 495.1bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--CATTCAKTYATT--
NNCATTCATTCATNNN

PB0170.1_Sox17_2/Jaspar

Match Rank:2
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----CATTCAKTYATT
GACCACATTCATACAAT

PB0068.1_Sox1_1/Jaspar

Match Rank:3
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CATTCAKTYATT
AATCAATTCAATAATT

PB0178.1_Sox8_2/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CATTCAKTYATT-
ACATTCATGACACG

PH0146.1_Pou3f1/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CATTCAKTYATT----
NANTTAATTAATTANNN

PH0019.1_Dbx2/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CATTCAKTYATT---
NAATTAATTAATTNNN

PB0005.1_Bbx_1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CATTCAKTYATT--
TAATTCAATGAAGTG

PH0120.1_Nkx6-3/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CATTCAKTYATT---
CNNANTAATTAATTNNC

PH0080.1_Hoxd8/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CATTCAKTYATT-
NAGCCATTAATTANTTA

PH0172.1_Tlx2/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CATTCAKTYATT-
AANTTATTAATTAATTA