Information for motif29


Reverse Opposite:

p-value:1e-7
log p-value:-1.658e+01
Information Content per bp:1.965
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets408.6 +/- 226.8bp
Average Position of motif in Background627.6 +/- 416.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TTACCTATGT
NNACTTACCTN---

MA0512.1_Rxra/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TTACCTATGT
NCTGACCTTTG-

MA0072.1_RORA_2/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TTACCTATGT---
TTGACCTANTTATN

MA0143.3_Sox2/Jaspar

Match Rank:4
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TTACCTATGT-
---CCTTTGTT

MA0033.1_FOXL1/Jaspar

Match Rank:5
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:TTACCTATGT---
-----TATGTNTA

MA0025.1_NFIL3/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TTACCTATGT
ANGTTACATAA--

PB0161.1_Rxra_2/Jaspar

Match Rank:7
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TTACCTATGT--
NNNNCAACCTTCGNGA

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TTACCTATGT
CTGACCTTTG-

MA0514.1_Sox3/Jaspar

Match Rank:9
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TTACCTATGT---
---CCTTTGTTTT

MA0071.1_RORA_1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TTACCTATGT
TGACCTTGAT