Information for motif3


Reverse Opposite:

p-value:1e-15
log p-value:-3.484e+01
Information Content per bp:1.835
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.30%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets364.0 +/- 283.0bp
Average Position of motif in Background720.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0091.1_TAL1::TCF3/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----CATCTGSTGTCA
CGACCATCTGTT----

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CATCTGSTGTCA
GCCATCTGTT----

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CATCTGSTGTCA
GCCAGCTGBTNB--

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CATCTGSTGTCA
RCCATMTGTT----

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:5
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------CATCTGSTGTCA
CCNNACCATCTGGCCTN-

PH0164.1_Six4/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CATCTGSTGTCA-----
TNNNNGGTGTCATNTNT

SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CATCTGSTGTCA
CAGCTGNT----

MA0498.1_Meis1/Jaspar

Match Rank:8
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CATCTGSTGTCA-------
----AGCTGTCACTCACCT

Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CATCTGSTGTCA
NCAGCTGCTG---

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:10
Score:0.62
Offset:-7
Orientation:forward strand
Alignment:-------CATCTGSTGTCA-
ANAGTGCCACCTGGTGGCCA