Information for motif35


Reverse Opposite:

p-value:1e-5
log p-value:-1.222e+01
Information Content per bp:1.530
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets257.3 +/- 87.0bp
Average Position of motif in Background702.2 +/- 192.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TCTCTCAACT
AGCCACTCAAG-

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TCTCTCAACT
CTGTCTGTCACCT

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TCTCTCAACT
TGTCTGDCACCT

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TCTCTCAACT
AASCACTCAA--

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TCTCTCAACT--
SCTGTCARCACC

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TCTCTCAACT
KTTCACACCT

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TCTCTCAACT
RSCACTYRAG-

MA0523.1_TCF7L2/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TCTCTCAACT--
TNCCTTTGATCTTN

PB0013.1_Eomes_1/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---TCTCTCAACT----
NNTTTTCACACCTTNNN

PB0021.1_Gata3_1/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----TCTCTCAACT-------
NNTNANTTCTTATCTCTANANN