Information for motif36


Reverse Opposite:

p-value:1e-5
log p-value:-1.222e+01
Information Content per bp:1.530
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets246.6 +/- 212.3bp
Average Position of motif in Background140.0 +/- 119.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TGTAGTTTTG
NNTGTGGTTT--

PB0123.1_Foxl1_2/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TGTAGTTTTG----
NNTTTTGTTTTGATNT

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TGTAGTTTTG
CTGTGGTTTN-

MA0511.1_RUNX2/Jaspar

Match Rank:4
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------TGTAGTTTTG
GGGGTTTGTGGTTTG-

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:5
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TGTAGTTTTG
GCTGTGGTTT--

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:6
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TGTAGTTTTG
NNHTGTGGTTWN-

MA0002.2_RUNX1/Jaspar

Match Rank:7
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TGTAGTTTTG
GTCTGTGGTTT--

PB0146.1_Mafk_2/Jaspar

Match Rank:8
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TGTAGTTTTG--
CCTTGCAATTTTTNN

PB0034.1_Irf4_1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGTAGTTTTG-----
TNTGGTTTCGATACN

PB0120.1_Foxj1_2/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TGTAGTTTTG----
GTNTTGTTGTGANNT