Information for motif4


Reverse Opposite:

p-value:1e-14
log p-value:-3.452e+01
Information Content per bp:1.777
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.00%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets386.9 +/- 340.7bp
Average Position of motif in Background333.1 +/- 150.0bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:KAGAGGATTTCT-
--AAGGATATNTN

PB0181.1_Spdef_2/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--KAGAGGATTTCT--
CTACTAGGATGTNNTN

PH0037.1_Hdx/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-KAGAGGATTTCT----
TNNNATGATTTCNNCNN

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:KAGAGGATTTCT
-AGAGGAAGTG-

MA0467.1_Crx/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:KAGAGGATTTCT
AAGAGGATTAG-

PH0163.1_Six3/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:KAGAGGATTTCT-----
GATAGGGTATCACTAAT

GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--KAGAGGATTTCT------
NDBAGATRWTATCTVNNNNN

MA0081.1_SPIB/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:KAGAGGATTTCT
-AGAGGAA----

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-KAGAGGATTTCT
NNTGTGGATTSS-

PH0138.1_Pitx2/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-KAGAGGATTTCT----
TGAAGGGATTAATCATC