Information for motif41


Reverse Opposite:

p-value:1e-4
log p-value:-1.077e+01
Information Content per bp:1.951
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets262.3 +/- 230.7bp
Average Position of motif in Background1102.3 +/- 507.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0516.1_SP2/Jaspar

Match Rank:1
Score:0.78
Offset:-7
Orientation:reverse strand
Alignment:-------GGCGGGCC
GGGNGGGGGCGGGGC

Sp1(Zf)/Promoter/Homer

Match Rank:2
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---GGCGGGCC-
GGGGGCGGGGCC

PB0164.1_Smad3_2/Jaspar

Match Rank:3
Score:0.76
Offset:-6
Orientation:reverse strand
Alignment:------GGCGGGCC---
NAGANTGGCGGGGNGNA

MA0079.3_SP1/Jaspar

Match Rank:4
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---GGCGGGCC
GGGGGCGGGGC

POL003.1_GC-box/Jaspar

Match Rank:5
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----GGCGGGCC--
AGGGGGCGGGGCTG

PB0009.1_E2F3_1/Jaspar

Match Rank:6
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----GGCGGGCC--
ATAAGGGCGCGCGAT

PB0008.1_E2F2_1/Jaspar

Match Rank:7
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----GGCGGGCC--
ATAAAGGCGCGCGAT

PB0180.1_Sp4_2/Jaspar

Match Rank:8
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----GGCGGGCC---
CAAAGGCGTGGCCAG

POL006.1_BREu/Jaspar

Match Rank:9
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GGCGGGCC
GGCGCGCT

POL011.1_XCPE1/Jaspar

Match Rank:10
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GGCGGGCC-
GGGCGGGACC