Information for motif42


Reverse Opposite:

p-value:1e-4
log p-value:-1.004e+01
Information Content per bp:1.750
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif6.1
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets287.1 +/- 211.5bp
Average Position of motif in Background505.0 +/- 436.9bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.73
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0117.1_Mafb/Jaspar

Match Rank:1
Score:0.66
Offset:4
Orientation:forward strand
Alignment:GGGGGCTGACAC
----GCTGACGC

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GGGGGCTGACAC--
--TGTCTGDCACCT

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:3
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GGGGGCTGACAC-
---TGCTGACTCA

PB0010.1_Egr1_1/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----GGGGGCTGACAC
ANTGCGGGGGCGGN---

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GGGGGCTGACAC-
-GGTGYTGACAGS

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGGGGCTGACAC
AGGTGNCAGACAG

PB0076.1_Sp4_1/Jaspar

Match Rank:7
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GGGGGCTGACAC
NNNAAGGGGGCGGGNNN

MA0498.1_Meis1/Jaspar

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GGGGGCTGACAC------
---AGCTGTCACTCACCT

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GGGGGCTGACAC---
NGTAGGTTGGCATNNN

PB0100.1_Zfp740_1/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----GGGGGCTGACAC
NANNTGGGGGGGGNGN-