Information for motif9


Reverse Opposite:

p-value:1e-11
log p-value:-2.705e+01
Information Content per bp:1.590
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.70%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets332.4 +/- 352.7bp
Average Position of motif in Background306.0 +/- 295.8bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0174.1_Sox30_2/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TATGATGGTAAT----
TAAGATTATAATACGG

PB0064.1_Sox14_1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TATGATGGTAAT----
NNTAATTATAATTNNN

PB0069.1_Sox21_1/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TATGATGGTAAT----
TTTAATTATAATTAAG

GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TATGATGGTAAT----
-NAGATWNBNATCTNN

OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TATGATGGTAAT
CATTGTTATGCAAAT

PB0079.1_Sry_1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TATGATGGTAAT----
NANTATTATAATTNNN

PH0145.1_Pou2f3/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TATGATGGTAAT----
TTGTATGCAAATTAGA

PB0172.1_Sox1_2/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TATGATGGTAAT--
CTATAATTGTTAGCG

Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TATGATGGTAAT
--TTATGCAAAT

MA0142.1_Pou5f1::Sox2/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TATGATGGTAAT
CTTTGTTATGCAAAT