Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 2500)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 963)	% of Background Sequences with Motif
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-10	-2.385e+01	0.0000	26.0	1.04%	2.6	0.27%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-9	-2.173e+01	0.0000	1187.0	47.54%	405.5	41.46%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-9	-2.132e+01	0.0000	739.0	29.60%	237.9	24.32%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-7	-1.724e+01	0.0000	691.0	27.67%	225.6	23.06%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-7	-1.651e+01	0.0000	1196.0	47.90%	417.9	42.73%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-6	-1.409e+01	0.0000	1039.0	41.61%	361.1	36.92%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-5	-1.299e+01	0.0001	1668.0	66.80%	610.1	62.38%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-5	-1.265e+01	0.0001	752.0	30.12%	255.6	26.13%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-5	-1.167e+01	0.0002	172.0	6.89%	48.6	4.96%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-4	-1.101e+01	0.0004	438.0	17.54%	142.8	14.60%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-4	-1.095e+01	0.0004	295.0	11.81%	91.9	9.39%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-4	-1.083e+01	0.0004	404.0	16.18%	130.7	13.36%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-4	-1.081e+01	0.0004	1448.0	57.99%	527.3	53.91%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-4	-1.068e+01	0.0004	565.0	22.63%	189.2	19.35%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-4	-1.056e+01	0.0004	30.0	1.20%	5.9	0.61%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-4	-1.023e+01	0.0006	101.0	4.04%	26.1	2.67%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-4	-1.006e+01	0.0006	197.0	7.89%	58.7	6.00%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-4	-9.975e+00	0.0006	314.0	12.58%	99.2	10.14%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-4	-9.860e+00	0.0007	131.0	5.25%	36.3	3.71%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-4	-9.680e+00	0.0008	29.0	1.16%	5.8	0.60%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-4	-9.597e+00	0.0008	440.0	17.62%	145.2	14.85%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-4	-9.550e+00	0.0008	744.0	29.80%	258.8	26.46%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-3	-9.136e+00	0.0012	70.0	2.80%	17.5	1.79%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-3	-9.042e+00	0.0012	794.0	31.80%	279.0	28.52%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-3	-8.980e+00	0.0012	685.0	27.43%	237.3	24.27%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-3	-8.905e+00	0.0013	583.0	23.35%	199.1	20.36%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-3	-8.865e+00	0.0013	20.0	0.80%	3.6	0.37%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-3	-8.723e+00	0.0014	184.0	7.37%	55.7	5.69%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-3	-8.600e+00	0.0016	1228.0	49.18%	446.4	45.64%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-3	-8.528e+00	0.0016	589.0	23.59%	202.1	20.66%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-3	-8.366e+00	0.0018	130.0	5.21%	37.2	3.80%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-3	-8.180e+00	0.0022	87.0	3.48%	23.1	2.36%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-3	-8.019e+00	0.0025	446.0	17.86%	150.5	15.39%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-3	-7.927e+00	0.0026	210.0	8.41%	65.6	6.71%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-3	-7.786e+00	0.0029	34.0	1.36%	7.8	0.79%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-3	-7.491e+00	0.0038	1264.0	50.62%	463.6	47.40%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-3	-7.435e+00	0.0039	171.0	6.85%	52.1	5.33%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-3	-7.346e+00	0.0042	483.0	19.34%	165.1	16.89%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-3	-7.225e+00	0.0046	196.0	7.85%	61.1	6.24%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-3	-7.158e+00	0.0048	1412.0	56.55%	522.9	53.47%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-3	-7.034e+00	0.0053	567.0	22.71%	197.9	20.23%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-2	-6.851e+00	0.0062	717.0	28.71%	254.8	26.05%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-2	-6.736e+00	0.0068	458.0	18.34%	157.5	16.10%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-2	-6.641e+00	0.0073	9.0	0.36%	0.9	0.10%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-2	-6.593e+00	0.0075	476.0	19.06%	164.3	16.80%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-6.557e+00	0.0076	104.0	4.16%	31.0	3.17%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-2	-6.201e+00	0.0106	192.0	7.69%	61.5	6.29%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-2	-6.132e+00	0.0111	929.0	37.20%	337.9	34.55%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-2	-6.094e+00	0.0113	667.0	26.71%	237.7	24.30%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e-2	-5.958e+00	0.0127	191.0	7.65%	61.0	6.24%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-2	-5.901e+00	0.0132	252.0	10.09%	83.6	8.55%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-2	-5.699e+00	0.0158	139.0	5.57%	43.6	4.46%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-2	-5.535e+00	0.0183	552.0	22.11%	195.2	19.96%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-2	-5.441e+00	0.0197	554.0	22.19%	196.7	20.11%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-2	-5.419e+00	0.0198	874.0	35.00%	318.1	32.52%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-2	-5.347e+00	0.0209	323.0	12.94%	110.5	11.30%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-2	-5.296e+00	0.0216	227.0	9.09%	75.8	7.75%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-2	-5.161e+00	0.0243	168.0	6.73%	54.7	5.60%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-2	-4.991e+00	0.0284	564.0	22.59%	202.0	20.65%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e-2	-4.906e+00	0.0303	776.0	31.08%	282.0	28.83%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-2	-4.894e+00	0.0303	178.0	7.13%	58.8	6.01%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-2	-4.825e+00	0.0318	130.0	5.21%	41.9	4.28%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-2	-4.745e+00	0.0340	19.0	0.76%	4.2	0.43%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-2	-4.744e+00	0.0340	75.0	3.00%	22.1	2.26%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-2	-4.721e+00	0.0340	276.0	11.05%	94.7	9.68%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-2	-4.699e+00	0.0340	54.0	2.16%	15.6	1.59%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-2	-4.629e+00	0.0359	450.0	18.02%	159.4	16.30%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-4.578e+00	0.0372	898.0	35.96%	330.4	33.78%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-4.517e+00	0.0389	744.0	29.80%	271.0	27.71%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-1	-4.511e+00	0.0389	140.0	5.61%	46.0	4.70%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-4.382e+00	0.0433	735.0	29.44%	269.0	27.50%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-1	-4.356e+00	0.0438	309.0	12.37%	107.4	10.98%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-1	-4.317e+00	0.0449	56.0	2.24%	16.9	1.73%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-4.314e+00	0.0449	53.0	2.12%	15.2	1.56%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-1	-4.198e+00	0.0493	82.0	3.28%	25.2	2.58%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-1	-4.179e+00	0.0496	262.0	10.49%	90.2	9.23%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-1	-4.150e+00	0.0503	396.0	15.86%	140.3	14.34%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-4.108e+00	0.0519	565.0	22.63%	205.0	20.96%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-1	-4.102e+00	0.0519	73.0	2.92%	22.5	2.30%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-1	-4.102e+00	0.0519	302.0	12.09%	105.6	10.80%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-3.997e+00	0.0558	61.0	2.44%	18.1	1.85%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-1	-3.938e+00	0.0584	49.0	1.96%	14.8	1.51%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-3.936e+00	0.0584	46.0	1.84%	13.9	1.43%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-3.914e+00	0.0584	587.0	23.51%	213.7	21.85%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-3.862e+00	0.0609	126.0	5.05%	41.8	4.28%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-3.838e+00	0.0616	984.0	39.41%	366.8	37.50%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-3.695e+00	0.0703	918.0	36.76%	341.5	34.91%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-1	-3.687e+00	0.0703	128.0	5.13%	42.2	4.32%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-1	-3.681e+00	0.0703	1638.0	65.60%	623.8	63.78%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-1	-3.676e+00	0.0703	514.0	20.58%	186.7	19.09%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-3.577e+00	0.0756	269.0	10.77%	94.9	9.70%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-3.448e+00	0.0850	887.0	35.52%	330.6	33.81%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-3.405e+00	0.0878	619.0	24.79%	227.2	23.23%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e-1	-3.347e+00	0.0921	668.0	26.75%	246.5	25.20%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-3.319e+00	0.0937	310.0	12.41%	110.5	11.30%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-3.309e+00	0.0937	1071.0	42.89%	402.8	41.18%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-1	-3.223e+00	0.1010	439.0	17.58%	159.4	16.30%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-3.210e+00	0.1013	44.0	1.76%	13.8	1.41%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-3.210e+00	0.1013	557.0	22.31%	204.6	20.91%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-1	-3.144e+00	0.1061	258.0	10.33%	91.5	9.36%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-3.116e+00	0.1080	577.0	23.11%	212.9	21.77%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-3.113e+00	0.1080	196.0	7.85%	68.3	6.98%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-3.088e+00	0.1089	6.0	0.24%	0.9	0.09%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-3.024e+00	0.1149	403.0	16.14%	146.6	14.99%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-1	-2.966e+00	0.1207	108.0	4.33%	36.9	3.78%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-1	-2.931e+00	0.1238	389.0	15.58%	141.3	14.44%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-2.921e+00	0.1239	184.0	7.37%	64.4	6.59%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-1	-2.836e+00	0.1336	132.0	5.29%	45.3	4.63%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-1	-2.821e+00	0.1344	983.0	39.37%	370.1	37.84%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-1	-2.809e+00	0.1348	553.0	22.15%	204.3	20.89%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-2.791e+00	0.1359	34.0	1.36%	10.3	1.05%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-1	-2.782e+00	0.1360	57.0	2.28%	18.2	1.86%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-1	-2.728e+00	0.1423	479.0	19.18%	176.1	18.00%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-1	-2.691e+00	0.1464	510.0	20.42%	188.2	19.24%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.648e+00	0.1501	48.0	1.92%	15.3	1.56%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.648e+00	0.1501	48.0	1.92%	15.3	1.56%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-1	-2.646e+00	0.1501	368.0	14.74%	134.7	13.78%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-1	-2.625e+00	0.1510	694.0	27.79%	259.2	26.51%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-2.602e+00	0.1532	730.0	29.24%	273.2	27.93%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-2.601e+00	0.1532	407.0	16.30%	149.1	15.25%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-2.503e+00	0.1664	427.0	17.10%	157.6	16.11%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-2.489e+00	0.1674	157.0	6.29%	55.3	5.66%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-1	-2.441e+00	0.1742	154.0	6.17%	54.3	5.56%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-2.426e+00	0.1754	170.0	6.81%	60.9	6.23%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-2.411e+00	0.1766	30.0	1.20%	9.2	0.94%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-2.332e+00	0.1896	164.0	6.57%	58.5	5.99%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1	-2.321e+00	0.1903	804.0	32.20%	303.2	31.00%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-2.281e+00	0.1965	185.0	7.41%	66.7	6.82%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-2.244e+00	0.2022	206.0	8.25%	74.6	7.63%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-2.197e+00	0.2104	1144.0	45.81%	436.4	44.62%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e0	-2.152e+00	0.2183	879.0	35.20%	333.1	34.06%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-2.110e+00	0.2260	415.0	16.62%	154.1	15.75%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-2.109e+00	0.2260	1680.0	67.28%	647.7	66.23%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-2.081e+00	0.2291	1418.0	56.79%	544.9	55.72%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-2.067e+00	0.2307	529.0	21.19%	198.5	20.29%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-2.061e+00	0.2307	357.0	14.30%	132.3	13.53%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.036e+00	0.2344	1034.0	41.41%	394.2	40.31%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.860e+00	0.2774	697.0	27.91%	264.8	27.07%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.768e+00	0.3020	96.0	3.84%	34.6	3.54%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e0	-1.680e+00	0.3276	36.0	1.44%	12.4	1.27%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.670e+00	0.3285	114.0	4.57%	41.1	4.20%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-1.656e+00	0.3285	55.0	2.20%	19.1	1.95%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.656e+00	0.3285	55.0	2.20%	19.2	1.96%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.618e+00	0.3389	103.0	4.12%	37.2	3.80%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.607e+00	0.3402	1247.0	49.94%	480.4	49.11%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.518e+00	0.3694	774.0	31.00%	296.8	30.34%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.490e+00	0.3770	314.0	12.58%	118.0	12.07%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.478e+00	0.3790	46.0	1.84%	16.4	1.68%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.388e+00	0.4121	1737.0	69.56%	674.3	68.94%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.321e+00	0.4378	696.0	27.87%	267.3	27.33%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.316e+00	0.4378	1267.0	50.74%	490.4	50.14%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-1.305e+00	0.4389	140.0	5.61%	52.5	5.37%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.274e+00	0.4499	249.0	9.97%	94.2	9.63%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.223e+00	0.4701	238.0	9.53%	90.5	9.25%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.204e+00	0.4760	1703.0	68.20%	662.0	67.69%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.203e+00	0.4760	881.0	35.28%	340.5	34.82%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.181e+00	0.4811	253.0	10.13%	96.7	9.89%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.154e+00	0.4911	459.0	18.38%	176.2	18.02%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.153e+00	0.4911	1460.0	58.47%	567.7	58.04%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.140e+00	0.4916	141.0	5.65%	53.8	5.50%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-1.116e+00	0.5003	12.0	0.48%	4.2	0.43%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.113e+00	0.5003	190.0	7.61%	72.8	7.45%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.103e+00	0.5008	350.0	14.02%	135.0	13.80%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.095e+00	0.5020	36.0	1.44%	13.2	1.35%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.086e+00	0.5034	28.0	1.12%	10.3	1.06%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.081e+00	0.5034	130.0	5.21%	49.8	5.09%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.036e+00	0.5226	1220.0	48.86%	474.5	48.52%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.033e+00	0.5226	557.0	22.31%	215.4	22.03%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-9.984e-01	0.5364	111.0	4.45%	42.7	4.37%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-9.962e-01	0.5364	59.0	2.36%	22.1	2.26%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-9.592e-01	0.5513	219.0	8.77%	84.0	8.59%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-9.481e-01	0.5542	126.0	5.05%	48.7	4.98%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-8.934e-01	0.5820	2195.0	87.91%	858.5	87.78%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-8.581e-01	0.5994	45.0	1.80%	17.4	1.78%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-8.508e-01	0.6004	202.0	8.09%	78.7	8.05%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-7.697e-01	0.6474	88.0	3.52%	34.8	3.56%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-7.425e-01	0.6614	208.0	8.33%	81.3	8.32%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-7.282e-01	0.6672	241.0	9.65%	95.0	9.71%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-7.251e-01	0.6672	131.0	5.25%	51.4	5.26%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-7.013e-01	0.6778	856.0	34.28%	336.0	34.35%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-6.957e-01	0.6778	8.0	0.32%	3.3	0.34%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-6.734e-01	0.6893	166.0	6.65%	65.4	6.68%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-6.734e-01	0.6893	314.0	12.58%	123.6	12.64%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-6.463e-01	0.7006	1176.0	47.10%	462.0	47.23%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-6.207e-01	0.7148	99.0	3.96%	39.3	4.02%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-6.054e-01	0.7220	575.0	23.03%	226.8	23.19%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-5.608e-01	0.7508	30.0	1.20%	12.4	1.27%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-5.580e-01	0.7508	1505.0	60.27%	591.8	60.51%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-5.479e-01	0.7508	5.0	0.20%	2.2	0.23%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-5.479e-01	0.7508	5.0	0.20%	3.0	0.30%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-5.440e-01	0.7508	828.0	33.16%	326.4	33.37%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-5.287e-01	0.7551	75.0	3.00%	30.9	3.16%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-5.276e-01	0.7551	2049.0	82.06%	804.8	82.29%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-5.225e-01	0.7551	789.0	31.60%	311.5	31.85%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-4.923e-01	0.7711	793.0	31.76%	313.4	32.04%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-4.635e-01	0.7896	347.0	13.90%	138.6	14.17%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-4.525e-01	0.7943	1803.0	72.21%	710.0	72.59%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-4.210e-01	0.8155	91.0	3.64%	37.4	3.83%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-3.783e-01	0.8468	547.0	21.91%	218.1	22.29%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-3.654e-01	0.8535	301.0	12.05%	122.0	12.47%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-3.559e-01	0.8574	465.0	18.62%	186.3	19.04%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-3.549e-01	0.8574	65.0	2.60%	27.6	2.83%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-3.422e-01	0.8606	381.0	15.26%	153.8	15.73%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-3.333e-01	0.8641	573.0	22.95%	230.0	23.51%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-3.186e-01	0.8726	104.0	4.16%	43.6	4.46%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-2.878e-01	0.8955	4.0	0.16%	2.0	0.21%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.598e-01	0.9165	232.0	9.29%	95.8	9.80%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-2.567e-01	0.9165	167.0	6.69%	69.1	7.06%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-2.363e-01	0.9293	379.0	15.18%	154.7	15.82%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-2.289e-01	0.9317	176.0	7.05%	73.7	7.54%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-2.045e-01	0.9503	185.0	7.41%	77.5	7.92%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-1.898e-01	0.9598	249.0	9.97%	103.6	10.60%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-1.865e-01	0.9598	618.0	24.75%	250.2	25.58%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.673e-01	0.9724	473.0	18.94%	193.0	19.74%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.563e-01	0.9786	417.0	16.70%	171.1	17.49%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.487e-01	0.9815	434.0	17.38%	178.3	18.23%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.301e-01	0.9953	1225.0	49.06%	491.9	50.30%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.269e-01	0.9953	169.0	6.77%	72.2	7.38%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.268e-01	0.9953	48.0	1.92%	22.9	2.35%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.201e-01	0.9953	537.0	21.51%	220.3	22.53%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.157e-01	0.9953	814.0	32.60%	330.9	33.83%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.096e-01	0.9953	546.0	21.87%	224.1	22.92%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.039e-01	0.9953	31.0	1.24%	15.1	1.55%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.017e-01	0.9953	1352.0	54.14%	542.7	55.48%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.006e-01	0.9953	13.0	0.52%	7.7	0.79%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-9.968e-02	0.9953	182.0	7.29%	78.2	7.99%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-8.687e-02	0.9953	391.0	15.66%	163.5	16.72%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-7.818e-02	0.9978	842.0	33.72%	343.3	35.10%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-7.480e-02	0.9978	53.0	2.12%	25.6	2.62%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-7.225e-02	0.9978	192.0	7.69%	83.8	8.57%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-6.297e-02	0.9999	64.0	2.56%	30.2	3.09%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-4.333e-02	1.0000	22.0	0.88%	12.0	1.23%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-4.036e-02	1.0000	60.0	2.40%	29.9	3.05%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-3.905e-02	1.0000	109.0	4.37%	50.6	5.17%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-3.760e-02	1.0000	295.0	11.81%	127.1	13.00%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-3.756e-02	1.0000	2.0	0.08%	2.0	0.21%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-3.543e-02	1.0000	823.0	32.96%	339.3	34.69%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-2.960e-02	1.0000	160.0	6.41%	72.0	7.36%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-1.957e-02	1.0000	85.0	3.40%	41.1	4.21%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.792e-02	1.0000	268.0	10.73%	118.4	12.10%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.140e-02	1.0000	34.0	1.36%	19.8	2.02%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-6.045e-03	1.0000	1.0	0.04%	2.0	0.21%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.497e-03	1.0000	186.0	7.45%	88.3	9.02%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.807e-03	1.0000	253.0	10.13%	117.0	11.97%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-7.700e-04	1.0000	45.0	1.80%	27.1	2.77%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.000e-06	1.0000	135.0	5.41%	76.4	7.81%