Information for motif12


Reverse Opposite:

p-value:1e-10
log p-value:-2.519e+01
Information Content per bp:1.969
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.50%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets481.3 +/- 370.9bp
Average Position of motif in Background449.0 +/- 247.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0061.1_Sox11_1/Jaspar

Match Rank:1
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---AGAACAAGGA----
ATAAGAACAAAGGACTA

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---AGAACAAGGA----
AGAAGAACAAAGGACTA

PB0062.1_Sox12_1/Jaspar

Match Rank:3
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----AGAACAAGGA
NTTNAGAACAATTA

MA0515.1_Sox6/Jaspar

Match Rank:4
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:AGAACAAGGA
AAAACAATGG

PB0200.1_Zfp187_2/Jaspar

Match Rank:5
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---AGAACAAGGA---
NNAGGGACAAGGGCNC

MA0442.1_SOX10/Jaspar

Match Rank:6
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:AGAACAAGGA
---ACAAAG-

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AGAACAAGGA
RNAACAATGG

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AGAACAAGGA-
-GAACAATGGN

PB0072.1_Sox5_1/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AGAACAAGGA---
TTTAGAACAATAAAAT

PB0070.1_Sox30_1/Jaspar

Match Rank:10
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGAACAAGGA----
AATGAACAATGGAATT