Information for motif13


Reverse Opposite:

p-value:1e-10
log p-value:-2.519e+01
Information Content per bp:1.714
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.50%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets462.7 +/- 266.5bp
Average Position of motif in Background1128.5 +/- 494.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0118.1_Nkx6-1_1/Jaspar

Match Rank:1
Score:0.83
Offset:-5
Orientation:reverse strand
Alignment:-----TAATTAATCTGC
CNNAGTAATTAATTNNC

PH0054.1_Hoxa7_1/Jaspar

Match Rank:2
Score:0.81
Offset:-5
Orientation:forward strand
Alignment:-----TAATTAATCTGC
CGAGTTAATTAATAAGC

PH0120.1_Nkx6-3/Jaspar

Match Rank:3
Score:0.80
Offset:-5
Orientation:reverse strand
Alignment:-----TAATTAATCTGC
CNNANTAATTAATTNNC

PH0071.1_Hoxc6/Jaspar

Match Rank:4
Score:0.79
Offset:-6
Orientation:reverse strand
Alignment:------TAATTAATCTGC
NNTNATTAATTAATTTG-

MA0135.1_Lhx3/Jaspar

Match Rank:5
Score:0.78
Offset:-3
Orientation:reverse strand
Alignment:---TAATTAATCTGC
GATTAATTAATTT--

PH0011.1_Alx1_2/Jaspar

Match Rank:6
Score:0.78
Offset:-5
Orientation:forward strand
Alignment:-----TAATTAATCTGC
CGCATTAATTAATTGGC

PH0147.1_Pou3f2/Jaspar

Match Rank:7
Score:0.77
Offset:-5
Orientation:reverse strand
Alignment:-----TAATTAATCTGC
NNNACTAATTAATTANC

PH0069.1_Hoxc4/Jaspar

Match Rank:8
Score:0.77
Offset:-6
Orientation:reverse strand
Alignment:------TAATTAATCTGC
NNTNNTTAATTAATNCG-

PH0002.1_Alx4/Jaspar

Match Rank:9
Score:0.77
Offset:-5
Orientation:forward strand
Alignment:-----TAATTAATCTGC
CGCATTAATTAATTACC

PH0010.1_Alx1_1/Jaspar

Match Rank:10
Score:0.77
Offset:-5
Orientation:forward strand
Alignment:-----TAATTAATCTGC
CGAATTAATTAATCACC