Information for motif15


Reverse Opposite:

p-value:1e-10
log p-value:-2.455e+01
Information Content per bp:1.878
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif1.80%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets383.3 +/- 262.6bp
Average Position of motif in Background605.0 +/- 299.0bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GTGATAGATGCA
-TGATTGATGA-

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GTGATAGATGCA
ATGATKGATGRC

PB0144.1_Lef1_2/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GTGATAGATGCA-
NNANTGATTGATNTTN

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GTGATAGATGCA-
NNANTGATTGATNNNN

MA0070.1_PBX1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GTGATAGATGCA
TTTGATTGATGN-

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GTGATAGATGCA-
-TGATTRATGGCY

MA0594.1_Hoxa9/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GTGATAGATGCA
-TGATTTATGGC

PB0163.1_Six6_2/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GTGATAGATGCA---
ATGGGATATATCCGCCT

PH0014.1_Cphx/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GTGATAGATGCA--
ATGATCGAATCAAA

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GTGATAGATGCA
-DGATCRATAN-