Information for motif2


Reverse Opposite:

p-value:1e-14
log p-value:-3.383e+01
Information Content per bp:1.606
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.30%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets469.2 +/- 395.8bp
Average Position of motif in Background992.1 +/- 301.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0070.1_PBX1/Jaspar

Match Rank:1
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---TCAATCATATCT
CCATCAATCAAA---

MA0462.1_BATF::JUN/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TCAATCATATCT
TGAGTCATTTC-

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:3
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----TCAATCATATCT
GYCATCMATCAT----

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TCAATCATATCT
TCATCAATCA-----

PB0144.1_Lef1_2/Jaspar

Match Rank:5
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----TCAATCATATCT
GAAGATCAATCACTTA-

MA0594.1_Hoxa9/Jaspar

Match Rank:6
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TCAATCATATCT
GCCATAAATCA-----

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----TCAATCATATCT
GAAGATCAATCACTAA-

PB0126.1_Gata5_2/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TCAATCATATCT-----
NNNCTGATATCTCNNNN

PH0037.1_Hdx/Jaspar

Match Rank:9
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----TCAATCATATCT
AAGGCGAAATCATCGCA

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TCAATCATATCT-
--AAGGATATNTN