Information for motif20


Reverse Opposite:

p-value:1e-10
log p-value:-2.339e+01
Information Content per bp:1.919
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif2.70%
Number of Background Sequences with motif13.0
Percentage of Background Sequences with motif0.57%
Average Position of motif in Targets246.4 +/- 203.4bp
Average Position of motif in Background586.1 +/- 430.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0170.1_Sox17_2/Jaspar

Match Rank:1
Score:0.65
Offset:-7
Orientation:reverse strand
Alignment:-------GAATGAGATC
NTTNTATGAATGTGNNC

PH0151.1_Pou6f1_1/Jaspar

Match Rank:2
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GAATGAGATC--
GACGATAATGAGCTTGC

PH0152.1_Pou6f1_2/Jaspar

Match Rank:3
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GAATGAGATC--
AAACATAATGAGGTTGC

MA0492.1_JUND_(var.2)/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAATGAGATC---
AAAGATGATGTCATC

c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GAATGAGATC--
NGATGACGTCAT

PB0126.1_Gata5_2/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GAATGAGATC------
NNNCTGATATCTCNNNN

PB0169.1_Sox15_2/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GAATGAGATC---
TTGAATGAAATTCGA

MA0488.1_JUN/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GAATGAGATC-----
--ATGACATCATCNN

PH0164.1_Six4/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GAATGAGATC-----
ATAAATGACACCTATCA

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GAATGAGATC--
-AAGGATATNTN