Information for motif22


Reverse Opposite:

p-value:1e-9
log p-value:-2.127e+01
Information Content per bp:1.852
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.50%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets259.3 +/- 237.7bp
Average Position of motif in Background421.8 +/- 270.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0032.1_FOXC1/Jaspar

Match Rank:1
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:AGCACCTACA----
------TACTNNNN

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGCACCTACA
NNCACCTGNN

GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:3
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGCACCTACA
GGACCACCCACG

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AGCACCTACA
TGACACCT---

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:5
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----AGCACCTACA
ADGGYAGYAGCATCT

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGCACCTACA
AAGCACTTAA-

HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AGCACCTACA-
-GCACGTACCC

PB0003.1_Ascl2_1/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---AGCACCTACA----
CTCAGCAGCTGCTACTG

Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGCACCTACA--
YCCGCCCACGCN

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AGCACCTACA--
--CRCCCACGCA