Information for motif27


Reverse Opposite:

p-value:1e-7
log p-value:-1.802e+01
Information Content per bp:1.735
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets247.7 +/- 237.1bp
Average Position of motif in Background578.2 +/- 167.3bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CACCTTAAACTG
TGACACCT-------

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CACCTTAAACTG
TGACCTTGACCT-

MA0100.2_Myb/Jaspar

Match Rank:3
Score:0.55
Offset:5
Orientation:forward strand
Alignment:CACCTTAAACTG---
-----CCAACTGCCA

PB0092.1_Zbtb7b_1/Jaspar

Match Rank:4
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CACCTTAAACTG
AAGCCCCCCAAAAAT-

MA0505.1_Nr5a2/Jaspar

Match Rank:5
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CACCTTAAACTG
GCTGACCTTGAACTN

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CACCTTAAACTG
NNCACCTGNN----

BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer

Match Rank:7
Score:0.53
Offset:5
Orientation:forward strand
Alignment:CACCTTAAACTG---
-----NHAACBGYYV

PH0114.1_Nkx2-5/Jaspar

Match Rank:8
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CACCTTAAACTG
TAAGCCACTTGAATTT

PH0115.1_Nkx2-6/Jaspar

Match Rank:9
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----CACCTTAAACTG
TAAGCCACTTAACATT

PB0184.1_Tbp_2/Jaspar

Match Rank:10
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--CACCTTAAACTG-
GNNCGCTTAAATCGG