Information for motif29


Reverse Opposite:

p-value:1e-6
log p-value:-1.579e+01
Information Content per bp:1.530
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets325.1 +/- 209.2bp
Average Position of motif in Background298.3 +/- 203.9bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0109.1_Bbx_2/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGCATTAACAGA---
TGATTGTTAACAGTTGG

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGCATTAACAGA
-YCATTAMC---

PB0119.1_Foxa2_2/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGCATTAACAGA---
AAAAATAACAAACGG

PH0137.1_Pitx1/Jaspar

Match Rank:4
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----AGCATTAACAGA
TTAGAGGGATTAACAAT

MA0046.1_HNF1A/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----AGCATTAACAGA
GNTAATNATTAACC--

PB0016.1_Foxj1_1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGCATTAACAGA----
AAAGTAAACAAAAATT

PH0158.1_Rhox11_2/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGCATTAACAGA-----
TCNCTTTACAGCGNNNT

PH0123.1_Obox3/Jaspar

Match Rank:8
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----AGCATTAACAGA
TGAGGGGGATTAACTAT

PH0140.1_Pknox1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AGCATTAACAGA-----
-GGATTGACAGGTCNTT

BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer

Match Rank:10
Score:0.55
Offset:4
Orientation:forward strand
Alignment:AGCATTAACAGA--
----NHAACBGYYV